Specify features to analyze

Preprocess HR-pQCT data for subsequent analysis. Inclusion parameters are considered first, followed by omission parameters. For inclusion parameters, "all", c("parameter_names") or NULL are supported inputs. For omission parameters, c("parameter_names") or NULL are supported inputs.

analyzeWhich(
  object,
  include.sites = "all",
  include.sections = "all",
  include.times = "all",
  include.phantoms = "all",
  include.parameters = "all",
  include.scanDates = "all",
  include.scanIDs = "all",
  omit.sites = NULL,
  omit.sections = NULL,
  omit.times = NULL,
  omit.phantoms = NULL,
  omit.parameters = NULL,
  omit.scanDates = NULL,
  omit.scanIDs = NULL,
  which.assay = NULL
)

Arguments

object	calibration object
include.sites	sites to include in analysis
include.sections	sections to include in analysis
include.times	timePoints to include in analysis
include.phantoms	phantoms to include in analysis
include.parameters	parameters to include in analysis
include.scanDates	scanDates to include in analysis
include.scanIDs	scanIDs to include in analysis
omit.sites	sites to omit from analysis
omit.sections	phantom sections to omit from analysis
omit.times	timePoints to omit from analysis
omit.phantoms	phantoms to omit from analysis
omit.parameters	parameters to omit from analysis
omit.scanDates	scanDates to omit from analysis
omit.scanIDs	scanIDs to omit from analysis
which.assay	specifies assay

Value

list